Popular articles

What is ThermoFluor?

What is ThermoFluor?

The ThermoFluor assay is a quick, temperature-based assay to assess the stability of proteins. It can be used as an alternative to CD melts to determine melting temperatures. The dye is similar to ANS and binds to hydrophobic patches/denatured protein/molten globules and fluoresces.

How do thermal shift assays work?

In principle, this assay works by using a protein’s melting temperature as a readout for its thermal stability. As a protein is heated in the presence of this dye, the fluorescent signal increases with protein unfolding, allowing fluorescence as a function of temperature to be used as a readout of melting temperature.

What is thermal stability assay?

Thermal shift assays utilize differential scanning fluorimetry (DSF) to measure the thermal stability of a target protein and the increase in protein melting temperature upon the binding of a stabilizing agent. It is useful for identifying ligands, buffer conditions, and cofactors affecting protein stability.

How does Sypro orange work?

SYPRO Orange binds nonspecifically to hydrophobic surfaces, and water strongly quenches its fluorescence. When the protein unfolds, the exposed hydrophobic surfaces bind the dye, resulting in an increase in fluorescence by excluding water.

What does DSF measure?

Differential Scanning Fluorimetry (DSF) measures protein unfolding by monitory changes in fluorescence as a function of temperature. Conventional DSF uses a hydrophobic fluorescent dye that binds to proteins as they unfold. NanoDSF measures changes in intrinsic protein fluorescence as proteins unfold.

What is DSF used for?

DSF is a cost-effective, parallelizable, practical, and accessible biophysical technique widely used as a method to track both protein folding state and thermal stability. It provides a reliable tool to examine protein unfolding by slowly heating it up in a controlled environment.

How is protein thermal stability measured?

Methods of Determining Protein Stability

  1. Determining Protein Stability: Some of the Most Common Methods Used.
  2. Differential Scanning Calorimetry (DSC)
  3. Pulse-Chase Method.
  4. Bleach-chase method.
  5. Cycloheximide-chase method.
  6. Circular Dichroism (CD) Spectroscopy.
  7. Fluorescence-based Activity Assays.

What is the most common dye used for differential scanning fluorimetry analysis?

The Sypro orange dye commonly used for DSF revealed multiple overlapping thermal protein denaturation transitions for both the mAb and the Fab fragment, making quantitative analysis of ligand binding by thermal stabilization problematic.

How do you calculate protein stability?

How do you stabilize proteins?

The stability of proteins in aqueous solution is routinely enhanced by cosolvents such as glycerol. Glycerol is known to shift the native protein ensemble to more compact states. Glycerol also inhibits protein aggregation during the refolding of many proteins.

What is Fluorometry used for?

A fluorometer or fluorimeter is a device used to measure parameters of visible spectrum fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. These parameters are used to identify the presence and the amount of specific molecules in a medium.

How is protein denaturation measured?

A general method for measuring protein denaturation in cells using high sensitivity differential scanning calorimetry (DSC) is given. Profiles of specific heat (c(p) vs. temperature) are obtained providing information about transitions in cellular components including the denaturation of proteins.

Is thermofluor a label-free assay for protein screening?

Differential scanning fluorimetry (DSF), also known as ThermoFluor or Thermal Shift Assay, has become an important label-free technique for biophysical ligand screening and protein engineering 1, 2, 3, 4, 5.

What kind of thermofluor is used in fragment screening?

[…] Differential scanning fluorimetry (DSF), also known as ThermoFluor or Thermal Shift Assay, has become a commonly-used approach for detecting protein-ligand interactions, particularly in the context of fragment screening.

What can thermal shift assay be used for?

which frequently causes an increase in Tm. The fluorescence-based thermal shift assay is now widely used: • for study of ligands that can maximise protein stability and minimise aggregation. •as a method to identify inhibitors of target proteins without even knowing the protein’s function and its binding site (structural genomics projects). Folded

What’s the difference between thermofluor and differential scanning fluorimetry?

The name differential scanning fluorimetry (DSF) was introduced later but thermofluor is preferable as thermofluor is no longer trademarked and differential scanning fluorimetry is easily confused with differential scanning calorimetry. SYPRO Orange binds nonspecifically to hydrophobic surfaces, and water strongly quenches its fluorescence.